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Bioconductor version: 2.14
Testing SNPs and SNP interactions with a genotypic TDT. This package furthermore contains functions for computing pairwise values of LD measures and for identifying LD blocks, as well as functions for setting up matched case pseudo-control genotype data for case-parent trios in order to run trio logic regression, for imputing missing genotypes in trios, for simulating case-parent trios with disease risk dependent on SNP interaction, and for power and sample size calculation in trio data.
Author: Holger Schwender, Qing Li, Christoph Neumann, Philipp Berger, Margaret Taub, Ingo Ruczinski
Maintainer: Holger Schwender <holger.schw at gmx.de>
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R Script | Trio Logic Regression and genotypic TDT | |
Reference Manual |
biocViews | GeneticVariability, Genetics, Microarray, SNP, Software |
Version | 3.2.1 |
In Bioconductor since | BioC 2.13 (R-3.0) |
License | LGPL-2 |
Depends | R (>= 3.0.1) |
Imports | |
Suggests | survival, haplo.stats, mcbiopi, siggenes, splines, LogicReg (>= 1.5.3), logicFS(>= 1.28.1), KernSmooth, VariantAnnotation |
System Requirements | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me |
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Package Source | trio_3.2.1.tar.gz |
Windows Binary | trio_3.2.1.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | trio_3.2.1.tgz |
Mac OS X 10.9 (Mavericks) | trio_3.2.1.tgz |
Browse/checkout source | (username/password: readonly) |
Package Downloads Report | Download Stats |
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