To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("trackViewer")

In most cases, you don't need to download the package archive at all.

trackViewer

light package to plot elegant track layers

Bioconductor version: 2.14

visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq.

Author: Jianhong Ou, Yong-Xu Wang, Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>

Citation (from within R, enter citation("trackViewer")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("trackViewer")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("trackViewer")

PDF	R Script	trackViewer Vignette
PDF		Reference Manual

biocViews	GenomicsSequence, Software, Visualization
Version	1.0.2
In Bioconductor since	BioC 2.14 (R-3.1)
License	GPL (>= 2)
Depends	R (>= 3.1.0), methods, GenomicRanges, grid, gWidgetstcltk
Imports	GenomicAlignments, GenomicFeatures, Gviz, pbapply, Rsamtools, rtracklayer, scales
Suggests	biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, BiocGenerics, BiocStyle
System Requirements
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Depends On Me
Imports Me
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