To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("sigPathway")
In most cases, you don't need to download the package archive at all.
Bioconductor version: 2.14
Conducts pathway analysis by calculating the NT_k and NE_k statistics as described in Tian et al. (2005)
Author: Weil Lai (optimized R and C code), Lu Tian and Peter Park (algorithm development and initial R code)
Maintainer: Weil Lai <wlai at alum.mit.edu>
Citation (from within R,
enter citation("sigPathway")
):
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("sigPathway")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sigPathway")
R Script | sigPathway | |
Reference Manual |
biocViews | DifferentialExpression, MultipleComparison, Software |
Version | 1.32.1 |
In Bioconductor since | BioC 1.9 (R-2.4) |
License | GPL-2 |
Depends | R (>= 2.10) |
Imports | |
Suggests | hgu133a.db(>= 1.10.0), XML (>= 1.6-3), AnnotationDbi(>= 1.3.12) |
System Requirements | |
URL | http://www.pnas.org/cgi/doi/10.1073/pnas.0506577102 http://www.chip.org/~ppark/Supplements/PNAS05.html |
Depends On Me | tRanslatome |
Imports Me | |
Suggests Me |
Follow Installation instructions to use this package in your R session.
Package Source | sigPathway_1.32.1.tar.gz |
Windows Binary | sigPathway_1.32.1.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | sigPathway_1.32.1.tgz |
Mac OS X 10.9 (Mavericks) | sigPathway_1.32.1.tgz |
Browse/checkout source | (username/password: readonly) |
Package Downloads Report | Download Stats |
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