To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("seqCNA")

In most cases, you don't need to download the package archive at all.

seqCNA

Copy number analysis of high-throughput sequencing cancer data

Bioconductor version: 2.14

Copy number analysis of high-throughput sequencing cancer data with fast summarization, extensive filtering and improved normalization

Author: David Mosen-Ansorena

Maintainer: David Mosen-Ansorena <dmosen.gn at cicbiogune.es>

Citation (from within R, enter citation("seqCNA")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("seqCNA")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqCNA")

PDF	R Script	seqCNA
PDF		Reference Manual

biocViews	CopyNumberVariation, Genetics, Sequencing, Software
Version	1.6.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL-3
Depends	R (>= 3.0), GLAD(>= 2.14), doSNOW (>= 1.0.5), adehabitatLT (>= 0.3.4), seqCNA.annot(>= 0.99), methods
Imports
Suggests
System Requirements	samtools
URL
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Imports Me
Suggests Me

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