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SiRNA correction for seed mediated off-target effect

Bioconductor version: 2.14

Corrects genome-wide siRNA screens for seed mediated off-target effect. Suitable functions to identify the effective seeds/miRNAs and to visualize their effect are also provided in the package.

Author: Andrea Franceschini

Maintainer: Andrea Franceschini <andrea.franceschini at>, Roger Meier <roger.meier at>, Christian von Mering <mering at>

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PDF R Script scsR Vignette
PDF   Reference Manual


biocViews Preprocessing, Software
Version 1.0.0
In Bioconductor since BioC 2.14 (R-3.1)
License GPL-2
Depends R (>= 2.14.0), methods, BiocGenerics, Biostrings, IRanges, plyr, STRINGdb, tcltk
Imports sqldf, hash, ggplot2, graphics, grDevices, RColorBrewer
Suggests RUnit
System Requirements
Depends On Me
Imports Me
Suggests Me

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