To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("roar")
In most cases, you don't need to download the package archive at all.
Bioconductor version: 2.14
Identify preferential usage of APA sites, comparing two biological conditions, starting from known alternative sites and alignments obtained from standard RNA-seq experiments.
Author: Elena Grassi
Maintainer: Elena Grassi <grassi.e at gmail.com>
Citation (from within R,
enter citation("roar")
):
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("roar")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("roar")
R Script | Identify differential APA usage from RNA-seq alignments | |
Reference Manual | ||
Text | NEWS |
biocViews | RNASeq, Sequencing, Software, Transcription |
Version | 1.0.0 |
In Bioconductor since | BioC 2.14 (R-3.1) |
License | GPL-3 |
Depends | R (>= 3.0.1) |
Imports | GenomicRanges, GenomicAlignments(>= 0.99.4), methods, rtracklayer, IRanges |
Suggests | RUnit, BiocGenerics, RNAseqData.HNRNPC.bam.chr14 |
System Requirements | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me |
Follow Installation instructions to use this package in your R session.
Package Source | roar_1.0.0.tar.gz |
Windows Binary | roar_1.0.0.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | roar_1.0.0.tgz |
Mac OS X 10.9 (Mavericks) | roar_1.0.0.tgz |
Browse/checkout source | (username/password: readonly) |
Package Downloads Report | Download Stats |
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