To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("pcot2")

In most cases, you don't need to download the package archive at all.

pcot2

Principal Coordinates and Hotelling's T-Square method

Bioconductor version: 2.14

PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.

Author: Sarah Song, Mik Black

Maintainer: Sarah Song <qson003 at stat.auckland.ac.nz>

Citation (from within R, enter citation("pcot2")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("pcot2")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("pcot2")

 

PDF R Script PCOT2 Vignette
PDF   Reference Manual

Details

biocViews DifferentialExpression, Microarray, Software
Version 1.32.0
In Bioconductor since BioC 1.9 (R-2.4)
License GPL (>= 2)
Depends R (>= 2.0.0), grDevices, Biobase, amap
Imports
Suggests multtest, hu6800.db, KEGG.db, mvtnorm
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source pcot2_1.32.0.tar.gz
Windows Binary pcot2_1.32.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) pcot2_1.32.0.tgz
Mac OS X 10.9 (Mavericks) pcot2_1.32.0.tgz
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