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parser for netCDF, mzXML, mzData and mzML files (mass spectrometry data)

Bioconductor version: 2.14

mzR provides a unified API to the common file formats and parsers available for mass spectrometry data. It comes with a wrapper for the ISB random access parser for mass spectrometry mzXML, mzData and mzML files. The package contains the original code written by the ISB, and a subset of the proteowizard library for mzML. The netCDF reading code has previously been used in XCMS.

Author: Bernd Fischer, Steffen Neumann, Laurent Gatto, Qiang Kou

Maintainer: Bernd Fischer <bernd.fischer at>, Steffen Neumann <sneumann at>, Laurent Gatto <lg390 at>, Qiang Kou <qkou at>

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PDF R Script mzR, Ramp, mzXML, mzData, mzML
PDF   Reference Manual
Text   NEWS


biocViews DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software
Version 1.10.8
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends Rcpp (>= 0.10.1), methods, utils
Imports Biobase
Suggests msdata(>= 0.1.9), RUnit, faahKO
System Requirements GNU make, NetCDF, zlib
Depends On Me MSnbase, TargetSearch, xcms
Imports Me RMassBank
Suggests Me qcmetrics, RforProteomics

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Package Source mzR_1.10.8.tar.gz
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