To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("iASeq")

In most cases, you don't need to download the package archive at all.

iASeq

iASeq: integrating multiple sequencing datasets for detecting allele-specific events

Bioconductor version: 2.14

It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across studies.

Author: Yingying Wei, Hongkai Ji

Maintainer: Yingying Wei <ywei at jhsph.edu>

Citation (from within R, enter citation("iASeq")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("iASeq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iASeq")

PDF	R Script	iASeq Vignette
PDF		Reference Manual

Details

biocViews	ChIPSeq, RNASeq, SNP, Software
Version	1.8.0
In Bioconductor since	BioC 2.10 (R-2.15)
License	GPL-2
Depends	R (>= 2.14.1)
Imports	graphics, grDevices
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	iASeq_1.8.0.tar.gz
Windows Binary	iASeq_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	iASeq_1.8.0.tgz
Mac OS X 10.9 (Mavericks)	iASeq_1.8.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Oligonucleotide Arrays
High-throughput Sequencing
Counting Reads for Differential Expression (parathyroideSE vignette)
Annotation
Annotating Variants
Annotating Ranges
Flow Cytometry and other assays
Candidate Binding Sites for Known Transcription Factors
Cloud-enabled cis-eQTL search and annotation

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center