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Epigenetic and gene transcription data normalization and integration with mixture models

Bioconductor version: 2.14

A package for the integrative analysis of RNA-seq or microarray based gene transcription and histone modification data obtained by ChIP-seq. The package provides methods for data preprocessing and matching as well as methods for fitting bayesian mixture models in order to detect genes with differences in both data types.

Author: Hans-Ulrich Klein, Martin Schaefer

Maintainer: Hans-Ulrich Klein <h.klein at>

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PDF R Script epigenomix package vignette
PDF   Reference Manual


biocViews ChIPSeq, Classification, DifferentialExpression, GeneExpression, Software
Version 1.4.1
In Bioconductor since BioC 2.12 (R-3.0)
License LGPL-3
Depends R (>= 2.12.0), methods, Biobase, IRanges, GenomicRanges
Imports BiocGenerics, beadarray
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