To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ensemblVEP")

In most cases, you don't need to download the package archive at all.

ensemblVEP

R Interface to Ensembl Variant Effect Predictor

Bioconductor version: 2.14

Query the Ensembl Variant Effect Predictor via the perl API

Author: Valerie Obenchain <vobencha at fhcrc.org>,

Maintainer: Valerie Obenchain <vobencha at fhcrc.org>

Citation (from within R, enter citation("ensemblVEP")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ensemblVEP")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ensemblVEP")

biocViews	Annotation, Software
Version	1.4.4
In Bioconductor since	BioC 2.12 (R-3.0)
License	Artistic-2.0
Depends	methods, BiocGenerics, GenomicRanges, VariantAnnotation
Imports	Biostrings
Suggests	RUnit
System Requirements	Ensembl VEP (API version 77) and the Perl package DBD::mysql must be installed. See the package README and Ensembl web site, http://www.ensembl.org/info/docs/tools/vep/index.html for installation instructions.
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