To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("cycle")
In most cases, you don't need to download the package archive at all.
cycle
Significance of periodic expression pattern in time-series data
Bioconductor version: 2.14
Package for assessing the statistical significance of periodic expression based on Fourier analysis and comparison with data generated by different background models
Author: Matthias Futschik <mfutschik at ualg.pt>
Maintainer: Matthias Futschik <mfutschik at ualg.pt>
Citation (from within R,
enter citation("cycle")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("cycle")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cycle")
| R Script | Introduction to cycle | |
| Reference Manual |
Details
| biocViews | Microarray, Software, TimeCourse |
| Version | 1.18.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) |
| License | GPL-2 |
| Depends | R (>= 2.10.0), Mfuzz |
| Imports | Biobase, stats |
| Suggests | |
| System Requirements | |
| URL | http://itb.biologie.hu-berlin.de/~futschik/software/R/cycle/index.html |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | cycle_1.18.0.tar.gz |
| Windows Binary | cycle_1.18.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | cycle_1.18.0.tgz |
| Mac OS X 10.9 (Mavericks) | cycle_1.18.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
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