To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("cn.farms")
In most cases, you don't need to download the package archive at all.
Bioconductor version: 2.14
This package implements the cn.FARMS algorithm for copy number variation (CNV) analysis. cn.FARMS allows to analyze the most common Affymetrix (250K-SNP6.0) array types, supports high-performance computing using snow and ff.
Author: Andreas Mitterecker, Djork-Arne Clevert
Maintainer: Andreas Mitterecker <mitterecker at bioinf.jku.at>
Citation (from within R,
enter citation("cn.farms")
):
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("cn.farms")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cn.farms")
R Script | cn.farms: Manual for the R package | |
Reference Manual |
biocViews | CopyNumberVariation, Microarray, Software |
Version | 1.12.0 |
In Bioconductor since | BioC 2.8 (R-2.13) |
License | LGPL (>= 2.0) |
Depends | R (>= 2.11), Biobase, methods, ff, oligoClasses, snow |
Imports | BiocGenerics, DBI, affxparser, oligo, DNAcopy, preprocessCore, lattice |
Suggests | pd.mapping250k.sty, pd.mapping250k.nsp, pd.genomewidesnp.5, pd.genomewidesnp.6 |
System Requirements | |
URL | http://www.bioinf.jku.at/software/cnfarms/cnfarms.html |
Depends On Me | |
Imports Me | |
Suggests Me |
Follow Installation instructions to use this package in your R session.
Package Source | cn.farms_1.12.0.tar.gz |
Windows Binary | cn.farms_1.12.0.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | cn.farms_1.12.0.tgz |
Mac OS X 10.9 (Mavericks) | cn.farms_1.12.0.tgz |
Browse/checkout source | (username/password: readonly) |
Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!