To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("chimera")
In most cases, you don't need to download the package archive at all.
Bioconductor version: 2.14
This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders: chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.
Author: Raffaele A Calogero, Matteo Carrara, Marco Beccuti, Francesca Cordero, Federica Cavallo
Maintainer: Raffaele A Calogero <raffaele.calogero at unito.it>
Citation (from within R,
enter citation("chimera")
):
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("chimera")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chimera")
R Script | chimera | |
Reference Manual | ||
Text | NEWS |
biocViews | Infrastructure, Software |
Version | 1.6.16 |
In Bioconductor since | BioC 2.12 (R-3.0) |
License | Artistic-2.0 |
Depends | Biobase, GenomicRanges(>= 1.13.3), Rsamtools(>= 1.13.1), GenomicAlignments, methods, AnnotationDbi, org.Hs.eg.db, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene |
Imports | |
Suggests | BiocParallel |
System Requirements | STAR, TopHat, bowtie and samtools are required for some functionalities |
URL | |
Depends On Me | oneChannelGUI |
Imports Me | |
Suggests Me |
Follow Installation instructions to use this package in your R session.
Package Source | chimera_1.6.16.tar.gz |
Windows Binary | chimera_1.6.16.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | chimera_1.6.16.tgz |
Mac OS X 10.9 (Mavericks) | chimera_1.6.16.tgz |
Browse/checkout source | (username/password: readonly) |
Package Downloads Report | Download Stats |
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