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A package for secondary analysis of fusion products

Bioconductor version: 2.14

This package facilitates the characterisation of fusion products events. It allows to import fusion data results from the following fusion finders: chimeraScan, bellerophontes, deFuse, FusionFinder, FusionHunter, mapSplice, tophat-fusion, FusionMap, STAR, Rsubread, fusionCatcher.

Author: Raffaele A Calogero, Matteo Carrara, Marco Beccuti, Francesca Cordero, Federica Cavallo

Maintainer: Raffaele A Calogero <raffaele.calogero at>

Citation (from within R, enter citation("chimera")):


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PDF R Script chimera
PDF   Reference Manual
Text   NEWS


biocViews Infrastructure, Software
Version 1.6.16
In Bioconductor since BioC 2.12 (R-3.0)
License Artistic-2.0
Depends Biobase, GenomicRanges(>= 1.13.3), Rsamtools(>= 1.13.1), GenomicAlignments, methods, AnnotationDbi,, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene
Suggests BiocParallel
System Requirements STAR, TopHat, bowtie and samtools are required for some functionalities
Depends On Me oneChannelGUI
Imports Me
Suggests Me

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Package Source chimera_1.6.16.tar.gz
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