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Big Data Management of Genome-wide Sequencing Variants

Bioconductor version: 2.14

Big data management of genome-wide variants using the CoreArray library: genotypic data and annotations are stored in an array-oriented manner, offering efficient access of genetic variants using the R language.

Author: Xiuwen Zheng, Stephanie M. Gogarten, Cathy Laurie

Maintainer: Xiuwen Zheng <zhengx at>

Citation (from within R, enter citation("SeqArray")):


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PDF SeqArray-JSM2013.pdf
PDF R Script SeqArray: an R/Bioconductor Package for Big Data Management of Genome-Wide Sequencing Variants
PDF   Reference Manual
Text   NEWS


biocViews Genetics, Infrastructure, Sequencing, Software
Version 1.4.0
In Bioconductor since BioC 2.12 (R-3.0)
License GPL-3
Depends gdsfmt (>= 1.0.0)
Imports methods, parallel, Biostrings, GenomicRanges, IRanges, VariantAnnotation
Suggests BiocGenerics, RUnit, Rcpp
System Requirements
Depends On Me SeqVarTools
Imports Me
Suggests Me

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