To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("ScISI")
In most cases, you don't need to download the package archive at all.
ScISI
In Silico Interactome
Bioconductor version: 2.14
Package to create In Silico Interactomes
Author: Tony Chiang <tchiang at fhcrc.org>
Maintainer: Tony Chiang <tchiang at fhcrc.org>
Citation (from within R,
enter citation("ScISI")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("ScISI")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ScISI")
| R Script | ScISI Vignette | |
| Reference Manual |
Details
| biocViews | GraphAndNetwork, NetworkInference, Proteomics, Software |
| Version | 1.36.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) |
| License | LGPL |
| Depends | R (>= 2.10), GO.db, RpsiXML, annotate, apComplex |
| Imports | AnnotationDbi, GO.db, RpsiXML, annotate, methods, org.Sc.sgd.db, utils |
| Suggests | ppiData, xtable |
| System Requirements | |
| URL | |
| Depends On Me | PCpheno, ppiStats, SLGI |
| Imports Me | PCpheno, SLGI |
| Suggests Me | RpsiXML |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ScISI_1.36.0.tar.gz |
| Windows Binary | ScISI_1.36.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | ScISI_1.36.0.tgz |
| Mac OS X 10.9 (Mavericks) | ScISI_1.36.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
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