To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ReQON")

In most cases, you don't need to download the package archive at all.

ReQON

Recalibrating Quality Of Nucleotides

Bioconductor version: 2.14

Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

Author: Christopher Cabanski, Keary Cavin, Chris Bizon

Maintainer: Christopher Cabanski <ccabansk at genome.wustl.edu>

Citation (from within R, enter citation("ReQON")):

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ReQON")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReQON")

biocViews	Preprocessing, QualityControl, Sequencing, Software
Version	1.10.0
In Bioconductor since	BioC 2.9 (R-2.14)
License	GPL-2
Depends	R (>= 3.0.2), Rsamtools, seqbias
Imports	rJava, graphics, stats, utils, grDevices
Suggests	BiocStyle
System Requirements	Java version >= 1.6
URL
Depends On Me
Imports Me
Suggests Me

Follow Installation instructions to use this package in your R session.

Common Bioconductor workflows include:

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!