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Quantify and Annotate Short Reads in R

Bioconductor version: 2.14

This package provides a framework for the quantification and analysis of Short Reads. It covers a complete workflow starting from raw sequence reads, over creation of alignments and quality control plots, to the quantification of genomic regions of interest.

Author: Anita Lerch, Dimos Gaiditzis and Michael Stadler

Maintainer: Michael Stadler <michael.stadler at>

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PDF R Script An introduction to QuasR
PDF   Reference Manual
Text   NEWS


biocViews ChIPSeq, Genetics, MethylSeq, Preprocessing, RNASeq, Sequencing, Software
Version 1.4.2
In Bioconductor since BioC 2.12 (R-3.0)
License GPL-2
Depends parallel, GenomicRanges(>= 1.13.3), Rbowtie
Imports methods, zlibbioc, BiocGenerics, IRanges, BiocInstaller, Biobase, Biostrings, GenomicRanges, BSgenome, Rsamtools(>= 1.13.1), GenomicFeatures, ShortRead(>= 1.19.1), GenomicAlignments
Suggests Rsamtools, rtracklayer, Gviz, RUnit, BiocStyle
System Requirements
Depends On Me
Imports Me
Suggests Me

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Package Source QuasR_1.4.2.tar.gz
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