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Quantitative DNA sequencing for chromosomal aberrations

Bioconductor version: 2.14

Quantitative DNA sequencing for chromosomal aberrations.

Author: Ilari Scheinin

Maintainer: Ilari Scheinin <ilari.scheinin at>

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PDF R Script Introduction to QDNAseq
PDF   Reference Manual
Text   NEWS


biocViews CopyNumberVariation, DNASeq, Genetics, GenomeAnnotation, Preprocessing, QualityControl, Sequencing, Software
Version 1.0.5
In Bioconductor since BioC 2.14 (R-3.1)
License GPL
Depends R (>= 2.15.0)
Imports graphics, methods, stats, utils, matrixStats (>= 0.9.4), R.utils (>= 1.28.4), Biobase(>= 2.18.0), CGHbase(>= 1.18.0), CGHcall(>= 2.18.0), DNAcopy(>= 1.32.0), Rsamtools(>= 1.10.0)
Suggests R.cache (>= 0.9.0), digest, snowfall, BSgenome, GenomeInfoDb, GenomicRanges
System Requirements
Depends On Me
Imports Me
Suggests Me

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Package Source QDNAseq_1.0.5.tar.gz
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Mac OS X 10.6 (Snow Leopard) QDNAseq_1.0.5.tgz
Mac OS X 10.9 (Mavericks) QDNAseq_1.0.5.tgz
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