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NetPathMiner for Biological Network Construction, Path Mining and Visualization

Bioconductor version: 2.14

NetPathMiner is a general framework for network path mining using genome-scale networks. It constructs networks from KGML, SBML and BioPAX files, providing three network representations, metabolic, reaction and gene representations. NetPathMiner finds active paths and applies machine learning methods to summarize found paths for easy interpretation. It also provides static and interactive visualizations of networks and paths to aid manual investigation.

Author: Ahmed Mohamed <mohamed at>, Tim Hancock <timothy.hancock at>, Ichigaku Takigawa <takigawa at>, Nicolas Wicker <nicolas.wicker at>

Maintainer: Ahmed Mohamed <mohamed at>

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PDF R Script NetPathMiner Vignette
PDF   Reference Manual
Text   NEWS


biocViews Classification, Clustering, GraphAndNetwork, Network, Pathways, Software
Version 1.0.4
In Bioconductor since BioC 2.14 (R-3.1)
License GPL (>= 2)
Depends R (>= 3.0.2), igraph (>= 0.6)
Suggests rBiopaxParser(>= 2.1), RCurl, RCytoscape
System Requirements libxml2, libSBML (>= 5.5)
Depends On Me
Imports Me
Suggests Me

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