To install this package, start R and enter:


In most cases, you don't need to download the package archive at all.


Filter replicated high-throughput transcriptome sequencing data

Bioconductor version: 2.14

This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.

Author: Andrea Rau, Melina Gallopin, Gilles Celeux, and Florence Jaffrezic

Maintainer: Andrea Rau <andrea.rau at>

Citation (from within R, enter citation("HTSFilter")):


To install this package, start R and enter:



To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script HTSFilter Vignette
PDF   Reference Manual
Text   NEWS


biocViews DifferentialExpression, Preprocessing, RNASeq, Sequencing, Software
Version 1.4.0
In Bioconductor since BioC 2.12 (R-3.0)
License Artistic-2.0
Depends methods, Biobase(>= 2.16.0), R (>= 2.10.0)
Imports DESeq(>= 1.8.3), edgeR(>= 2.6.12), DESeq2(>= 1.2.8), GenomicRanges, IRanges
Suggests EDASeq(>= 1.2.0)
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source HTSFilter_1.4.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) HTSFilter_1.4.0.tgz
Mac OS X 10.9 (Mavericks) HTSFilter_1.4.0.tgz
Browse/checkout source (username/password: readonly)
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center