To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("CoverageView")
In most cases, you don't need to download the package archive at all.
Bioconductor version: 2.14
This package provides a framework for the visualization of genome coverage profiles. It can be used for ChIP-seq experiments, but it can be also used for genome-wide nucleosome positioning experiments or other experiment types where it is important to have a framework in order to inspect how the coverage distributed across the genome
Author: Ernesto Lowy
Maintainer: Ernesto Lowy <ernestolowy at gmail.com>
Citation (from within R,
enter citation("CoverageView")
):
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("CoverageView")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CoverageView")
R Script | Easy visualization of the read coverage | |
Reference Manual |
biocViews | ChIPSeq, RNASeq, Sequencing, Software, Technology, Visualization |
Version | 1.0.0 |
In Bioconductor since | BioC 2.14 (R-3.1) |
License | Artistic-2.0 |
Depends | R (>= 2.10), methods, Rsamtools, rtracklayer |
Imports | IRanges, GenomicRanges, GenomicAlignments, parallel, tools |
Suggests | |
System Requirements | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me |
Follow Installation instructions to use this package in your R session.
Package Source | CoverageView_1.0.0.tar.gz |
Windows Binary | |
Mac OS X 10.6 (Snow Leopard) | CoverageView_1.0.0.tgz |
Mac OS X 10.9 (Mavericks) | CoverageView_1.0.0.tgz |
Browse/checkout source | (username/password: readonly) |
Package Downloads Report | Download Stats |
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