To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ChIPsim")

In most cases, you don't need to download the package archive at all.

ChIPsim

Simulation of ChIP-seq experiments

Bioconductor version: 2.14

A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.

Author: Peter Humburg

Maintainer: Peter Humburg <Peter.Humburg at well.ox.ac.uk>

Citation (from within R, enter citation("ChIPsim")):

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("ChIPsim")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("ChIPsim")

 

PDF R Script Simulating ChIP-seq experiments
PDF   Reference Manual

Details

biocViews ChIPSeq, Infrastructure, Software
Version 1.18.0
In Bioconductor since BioC 2.5 (R-2.10)
License GPL (>= 2)
Depends Biostrings(>= 2.29.2)
Imports IRanges, XVector, Biostrings, ShortRead, graphics, methods, stats, utils
Suggests actuar, zoo
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source ChIPsim_1.18.0.tar.gz
Windows Binary ChIPsim_1.18.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ChIPsim_1.18.0.tgz
Mac OS X 10.9 (Mavericks) ChIPsim_1.18.0.tgz
Browse/checkout source (username/password: readonly)
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