GatingHierarchy-class |
Class GatingHierarchy |
GatingSet |
constructors for GatingSet |
GatingSet-class |
Class '"GatingSet"' |
GatingSet-method |
Class '"GatingSet"' |
GatingSet-method |
constructors for GatingSet |
GatingSetList |
Class '"GatingSetList"' |
GatingSetList-class |
Class '"GatingSetList"' |
getChannelMarker |
get channel and marker information from a 'flowFrame' that matches to the given keyword |
getChildren |
Return the name of the parent population or a list of child populations of the current population in the GatingHierarchy |
getChildren-method |
Return the name of the parent population or a list of child populations of the current population in the GatingHierarchy |
getChildren-methods |
Return the name of the parent population or a list of child populations of the current population in the GatingHierarchy |
getCompensationMatrices |
Retrieve the compensation matrices from a GatingHierarchy |
getCompensationMatrices-method |
Retrieve the compensation matrices from a GatingHierarchy |
getCompensationMatrices-methods |
Retrieve the compensation matrices from a GatingHierarchy |
getData |
get gated flow data from a GatingHierarchy/GatingSet/GatingSetList |
getData-method |
get gated flow data from a GatingHierarchy/GatingSet/GatingSetList |
getData-method |
Return the cell events data that express in any of the single populations defined in 'y' |
getFJWSubsetIndices |
Fetch the indices for a subset of samples in a flowJo workspace, based on a keyword value pair |
getGate |
Return the flowCore gate definition associated with a node in a GatingHierarchy/GatingSet. |
getGate-method |
Class '"GatingSetList"' |
getGate-method |
Return the flowCore gate definition associated with a node in a GatingHierarchy/GatingSet. |
getIndiceMat |
Return the single-cell matrix of 1/0 dichotomized expression |
getIndices |
Get the membership indices for each event with respect to a particular gate in a GatingHierarchy |
getIndices-method |
Get the membership indices for each event with respect to a particular gate in a GatingHierarchy |
getIndices-methods |
Get the membership indices for each event with respect to a particular gate in a GatingHierarchy |
getKeywords |
Get Keywords |
getKeywords-method |
Get Keywords |
getKeywords-methods |
Get Keywords |
getLoglevel |
get/set the log level |
getNodes |
Get the names of all nodes from a gating hierarchy. |
getNodes-method |
Get the names of all nodes from a gating hierarchy. |
getNodes-methods |
Get the names of all nodes from a gating hierarchy. |
getParent |
Return the name of the parent population or a list of child populations of the current population in the GatingHierarchy |
getParent-method |
Return the name of the parent population or a list of child populations of the current population in the GatingHierarchy |
getParent-methods |
Return the name of the parent population or a list of child populations of the current population in the GatingHierarchy |
getPopStats |
Return a table of population statistics for all populations in a GatingHierarchy/GatingSet or the population proportions or the total number of events of a node (population) in a GatingHierarchy |
getPopStats-method |
Class '"GatingSetList"' |
getPopStats-method |
Return a table of population statistics for all populations in a GatingHierarchy/GatingSet or the population proportions or the total number of events of a node (population) in a GatingHierarchy |
getPopStats-methods |
Return a table of population statistics for all populations in a GatingHierarchy/GatingSet or the population proportions or the total number of events of a node (population) in a GatingHierarchy |
getProp |
Return a table of population statistics for all populations in a GatingHierarchy/GatingSet or the population proportions or the total number of events of a node (population) in a GatingHierarchy |
getProp-method |
Return a table of population statistics for all populations in a GatingHierarchy/GatingSet or the population proportions or the total number of events of a node (population) in a GatingHierarchy |
getProp-methods |
Return a table of population statistics for all populations in a GatingHierarchy/GatingSet or the population proportions or the total number of events of a node (population) in a GatingHierarchy |
getQAStats-method |
Class '"GatingSetList"' |
getSample |
Get the sample name associated with a GatingHierarchy |
getSample-method |
Get the sample name associated with a GatingHierarchy |
getSampleGroups |
Get a table of sample groups from a flowJo workspace |
getSampleGroups-method |
Get a table of sample groups from a flowJo workspace |
getSampleGroups-methods |
Get a table of sample groups from a flowJo workspace |
getSamples |
Get a list of samples from a flowJo workspace |
getSamples-method |
Class '"GatingSetList"' |
getSamples-method |
Get a list of samples from a flowJo workspace |
getSamples-methods |
Get a list of samples from a flowJo workspace |
getSingleCellExpression |
Return the cell events data that express in any of the single populations defined in 'y' |
getSingleCellExpression-method |
Return the cell events data that express in any of the single populations defined in 'y' |
getTotal |
Return a table of population statistics for all populations in a GatingHierarchy/GatingSet or the population proportions or the total number of events of a node (population) in a GatingHierarchy |
getTotal-method |
Return a table of population statistics for all populations in a GatingHierarchy/GatingSet or the population proportions or the total number of events of a node (population) in a GatingHierarchy |
getTotal-methods |
Return a table of population statistics for all populations in a GatingHierarchy/GatingSet or the population proportions or the total number of events of a node (population) in a GatingHierarchy |
getTransformations |
Return a list of transformations or a transformation in a GatingHierarchy |
getTransformations-method |
Return a list of transformations or a transformation in a GatingHierarchy |
getTransformations-methods |
Return a list of transformations or a transformation in a GatingHierarchy |
sampleNames |
Get/update sample names in a GatingSet |
sampleNames-method |
Class '"GatingSetList"' |
sampleNames-method |
Get/update sample names in a GatingSet |
sampleNames<--method |
Get/update sample names in a GatingSet |
save_gs |
save/load a GatingSet/GatingSetList to/from disk. |
save_gslist |
save/load a GatingSet/GatingSetList to/from disk. |
setGate |
Create a GatingSet and add/remove the flowCore gate(or population) to/from a GatingHierarchy/GatingSet. |
setGate-method |
Create a GatingSet and add/remove the flowCore gate(or population) to/from a GatingHierarchy/GatingSet. |
setLoglevel |
get/set the log level |
setNode |
Update the name of one node in a gating hierarchy/GatingSet. |
setNode-method |
Update the name of one node in a gating hierarchy/GatingSet. |
show |
A class describing logical operation (& or |) of the reference populations |
show-method |
Class GatingHierarchy |
show-method |
Class '"GatingSet"' |
show-method |
Class '"GatingSetList"' |
show-method |
A class describing logical operation (& or |) of the reference populations |
show-method |
An R representation of a flowJo workspace. |
summary |
An R representation of a flowJo workspace. |
summary-method |
An R representation of a flowJo workspace. |