accessors | Accessors for a "DEXUSResult". |
as.data.frame-method | Class '"DEXUSResult"' |
conditionSizes | Accessors for a "DEXUSResult". |
conditionSizes-method | Class '"DEXUSResult"' |
countsBottomly | RNA-Seq data of two mice strains. |
countsGilad | RNA-Seq data of humans, chimpanzees and rhesus macaques. |
countsLi | RNA-Seq data of the developmental zones of maize leaves. |
countsMontgomery | RNA-Seq data of 60 European HapMap individuals. |
countsPickrell | RNA-Seq data of 69 Nigerian HapMap individuals. |
dexss | Detection of Differential Expression in a semi-supervised Setting |
DEXSS, | Detection of Differential Expression in a semi-supervised Setting |
dexus | Detection of Differential Expression in an Unsupervised Setting |
DEXUS, | Detection of Differential Expression in an Unsupervised Setting |
dexus.parallel | A parallel version of DEXUS. |
DEXUSResult-class | Class '"DEXUSResult"' |
dispersions | Accessors for a "DEXUSResult". |
dispersions-method | Class '"DEXUSResult"' |
getSizeNB | Maximum-likelihood and maximum-a-posteriori estimators for the negative binomial distribution. |
INI | I/NI filtering of a DEXUS result. |
INI-method | Class '"DEXUSResult"' |
INICalls | Accessors for a "DEXUSResult". |
INICalls-method | Class '"DEXUSResult"' |
INIThreshold | Accessors for a "DEXUSResult". |
INIThreshold-method | Class '"DEXUSResult"' |
INIThreshold-set | Set the I/NI threshold. |
INIThreshold<- | Set the I/NI threshold. |
INIThreshold<--method | Class '"DEXUSResult"' |
INIValues | Accessors for a "DEXUSResult". |
INIValues-method | Class '"DEXUSResult"' |
inputData | Accessors for a "DEXUSResult". |
inputData-method | Class '"DEXUSResult"' |
logFC | Accessors for a "DEXUSResult". |
logFC-method | Class '"DEXUSResult"' |
means | Accessors for a "DEXUSResult". |
means-method | Class '"DEXUSResult"' |
normalizeData | Normalization of RNA-Seq count data. |
normalizedData | Accessors for a "DEXUSResult". |
normalizedData-method | Class '"DEXUSResult"' |
params | Accessors for a "DEXUSResult". |
params-method | Class '"DEXUSResult"' |
plot | Visualization of a result of the DEXUS algorithm. |
plot-method | Class '"DEXUSResult"' |
posteriorProbs | Accessors for a "DEXUSResult". |
posteriorProbs-method | Class '"DEXUSResult"' |
pvals | Accessors for a "DEXUSResult". |
pvals-method | Class '"DEXUSResult"' |
responsibilities | Accessors for a "DEXUSResult". |
responsibilities-method | Class '"DEXUSResult"' |
sampleNames | Accessors for a "DEXUSResult". |
sampleNames-method | Class '"DEXUSResult"' |
show-method | Class '"DEXUSResult"' |
sizeFactors | Accessors for a "DEXUSResult". |
sizeFactors-method | Class '"DEXUSResult"' |
sizeParameters | Accessors for a "DEXUSResult". |
sizeParameters-method | Class '"DEXUSResult"' |
sort | Sorting a DEXUS result. |
sort-method | Class '"DEXUSResult"' |
transcriptNames | Accessors for a "DEXUSResult". |
transcriptNames-method | Class '"DEXUSResult"' |
[-method | Class '"DEXUSResult"' |
`[` | Subsetting a "DEXUSResult". |
`[`-method | Subsetting a "DEXUSResult". |