This package classifies putative polyadenylation sites as true or false/internally oligodT primed.


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Documentation for package ‘cleanUpdTSeq’ version 1.2.0

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cleanUpdTSeq-package This package classifies putative polyadenylation sites.
BED2GRangesSeq BED2GRangesSeq
buildFeatureVector buildFeatureVector
cleanUpdTSeq This package classifies putative polyadenylation sites.
data.NaiveBayes Training Data
getDownstreamSequence getDownstreamSequence
getUpstreamSequence Get upstream sequences of the putative pA site
predictTestSet predictTestSet