High-quality circular visualization of omic data


[Up] [Top]

Documentation for package ‘OmicCircos’ version 1.2.0

Help Pages

circos draw circular
OmicCircos OmicCircos package
segAnglePo generate circular skeleton data by user's mapping data
segAnglePo-method ~~ Methods for Function 'segAnglePo' ~~
segAnglePo-methods ~~ Methods for Function 'segAnglePo' ~~
sim.circos circular data simulation
TCGA.BC.cnv.2k.60 sub copy number data of TCGA Breast Cancer
TCGA.BC.fus gene fusion (partly) of TCGA Breast Cancer
TCGA.BC.fus.lab gene fusion (partly) of TCGA Breast Cancer
TCGA.BC.gene.exp.2k.60 sub gene expression data of TCGA Breast Cancer
TCGA.BC.sample60 sub types of TCGA Breast Cancer sub data set
TCGA.BC_Her2_cnv_exp the pvalues of the association between the copy number and gene expression of sub TCGA Breast Cancer data set
TCGA.PAM50_genefu_hg18 PAM50 gene list (hg18)
UCSC.chr.colors chromosome banding colors from UCSC Genome Browser
UCSC.hg18 human hg18 mapping reference by UCSC cytogenetics table
UCSC.hg18.chr human hg18 cytogenetics table from UCSC Genome Browser
UCSC.hg19 human hg19 mapping reference by UCSC cytogenetics table
UCSC.hg19.chr human hg19 cytogenetics table from UCSC Genome Browser
UCSC.hg19.mac3 seg.angle.po output of human hg19 and monkey rhemac3 by UCSC Genome Browser
UCSC.hg19.mac3.chr human hg19 and monkey rhemac3 cytogenetics tables from UCSC Genome Browser
UCSC.hg19.mm10 seg.angle.po output of human hg19 and mouse mm10 by UCSC Genome Browser
UCSC.hg19.mm10.chr human hg19 and mouse mm10 cytogenetics tables from UCSC Genome Browser
UCSC.hs_cyto_mac genome comparison of human hg19 and Macaca mulatta Mac3 by UCSC Genome Browser
UCSC.hs_cyto_mm genome comparison of human hg19 and mouse mm10 by UCSC Genome Browser
UCSC.mm10 mouse mm10 mapping reference by UCSC cytogenetics table
UCSC.mm10.chr mouse mm10 cytogenetics table from UCSC Genome Browser
UCSC.mm9 mouse mm9 mapping reference by UCSC cytogenetics table
UCSC.mm9.chr mouse mm9 cytogenetics table from UCSC Genome Browser
UCSC_cytoband_hg19_Mac3 combined cytogenetics data in human hg18 and Macaca mulatta Mac3
UCSC_cytoband_hg19_mm10 combined cytogenetics data in human hg18 and mouse mm10