AMS | Class "MEDMEset" |
AMS-method | Class "MEDMEset" |
CG | Class "MEDMEset" |
CG-method | Class "MEDMEset" |
CGcount | Determining the count of CpG dinucleotides for a set of genomic locations |
CGcounts | Class "MEDMEset" |
chr | Class "MEDMEset" |
chr-method | Class "MEDMEset" |
initialize-method | Class "MEDMEset" |
logR | Class "MEDMEset" |
logR-method | Class "MEDMEset" |
MEDME | Determining the logistic model of MeDIP enrichment in respect to the expected DNA methylation level |
MEDME.predict | Applying the logistic model on MeDIP enrichment data |
MEDME.readFiles | reading sgr or gff files for MEDME |
MEDME.writeFiles | writeFiles sgr or gff files from MEDME output |
MEDMEset-class | Class "MEDMEset" |
org | Class "MEDMEset" |
org-method | Class "MEDMEset" |
organism | Class "MEDMEset" |
pos | Class "MEDMEset" |
pos-method | Class "MEDMEset" |
RMS | Class "MEDMEset" |
RMS-method | Class "MEDMEset" |
show-method | Class "MEDMEset" |
smooth | Determining weighted MeDIP data |
smoothed | Class "MEDMEset" |
smoothed-method | Class "MEDMEset" |
testMEDMEset | Dataset of class MEDMEset for testing MEDME |
[-method | Class "MEDMEset" |