genediff |
Gene-by-gene and posterior p-value calculation function. |
glog |
Generalized log transformation function |
LMGene |
LMGene main function |
lnorm |
Lowess normalization function |
lnormeS |
Function to apply lowess normalization to an expression set. |
neweS |
Coerce a matrix to class ExpressionSet |
norm |
Normalization function |
plotMeanSD |
Plotting function for gene means and standard deviations |
psmeans |
Function to take means of probesets. |
pvadjust |
P-value adjusting function |
rowaov |
Gene by gene ANOVA function |
sample.eS |
Sample array data for LMGene |
sample.ind |
Sample probeset index vector |
sample.mat |
Sample array data for LMGene package |
tranest |
Glog transformation parameter estimation function |
tranestAffyProbeLevel |
Glog transformation parameter estimation function for probe-level Affymetrix expression data |
transeS |
Function to apply the glog transform to an expression set. |
vlist |
Sample experimental/phenotype data for LMGene package |