An R pipeline for .bed file annotation, comparing GO term enrichment between gene sets and data visualisation


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Documentation for package ‘CompGO’ version 1.0.0

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annotateBedFromDb Annotate .bed file to genes
bed.sample A sample of 25 rows from a .bed file of mm9 regions
doZtrans.single Z transform a single functional annotation chart from DAVID
getFnAnot_genome Get the functional annotation chart of a gene list using DAVID
plotPairwise Generates a scatterplot of two sets of GO terms based on DAVID P-values
plotTwoGODags Plots a directed acyclic graph of GO terms from two different sources
plotZScores Performs z transform on two sets of GO terms and plots scatterplot of result
slidingJaccard Plot two functional annotation charts using a sliding Jaccard coefficient
zTransformDirectory Z-score transformation of DAVID functional annotation charts in a supplied directory