ChIPseeker for ChIP peak Annotation, Comparison, and Visualization


[Up] [Top]

Documentation for package ‘ChIPseeker’ version 1.0.11

Help Pages

ChIPseeker-package ChIP-SEQ Annotation, Visualization and Comparison
addGeneAnno addGeneAnno
annotatePeak annotatePeak
ChIPseeker ChIP-SEQ Annotation, Visualization and Comparison
downloadGEObedFiles downloadGEObedFiles
downloadGSMbedFiles downloadGSMbedFiles
enrichAnnoOverlap enrichAnnoOverlap
enrichPeakOverlap enrichPeakOverlap
getGenomicAnnotation getGenomicAnnotation
getGEOgenomeVersion getGEOgenomeVersion
getGEOInfo getGEOInfo
getGEOspecies getGEOspecies
getNearestFeatureIndicesAndDistances getNearestFeatureIndicesAndDistances
getPromoters getPromoters
getSampleFiles getSampleFiles
getTagMatrix getTagMatrix
gsminfo Information Datasets
info Information Datasets
overlap overlap
peakHeatmap peakHeatmap
plotAnnoBar plotAnnoBar
plotAnnoPie plotAnnoPie
plotAvgProf plotAvgProf
plotAvgProf2 plotAvgProf
plotChrCov plotChrCov
plotDistToTSS plotDistToTSS
readPeakFile readPeakFile
shuffle shuffle
tagHeatmap tagHeatmap
tagMatrixList Information Datasets
ucsc_release Information Datasets
vennplot vennplot
vennplot.peakfile vennplot.peakfile