assembly1 | Class '"CNE"' |
assembly1-method | Class '"CNE"' |
assembly2 | Class '"CNE"' |
assembly2-method | Class '"CNE"' |
axisTrack | Example data for plotting annotation. |
Axt | Class '"Axt"' |
Axt-class | Class '"Axt"' |
axtDanRer7Hg19 | The dataset axtDanRer7Hg19, axtHg19DanRer7 |
axtHg19DanRer7 | The dataset axtDanRer7Hg19, axtHg19DanRer7 |
axtInfo | axtInfo function |
binFromCoordRange | UCSC bin indexing system utility functions |
binRangesFromCoordRange | UCSC bin indexing system utility functions |
binRestrictionString | UCSC bin indexing system utility functions |
blatCNE | Wrapper function of blat for CNEs |
c-method | Class '"Axt"' |
ceScan | ceScan function |
ceScan-method | ceScan function |
ceScan-methods | ceScan function |
ceScanOneStep | ceScanOneStep function |
CNE | Class '"CNE"' |
CNE-class | Class '"CNE"' |
CNE1 | Class '"CNE"' |
CNE1-method | Class '"CNE"' |
CNE2 | Class '"CNE"' |
CNE2-method | Class '"CNE"' |
cneBlatedDanRer7Hg19 | The dataset cneBlatedDanRer7Hg19 |
CNEDanRer7Hg19 | CNEHg19DanRer7 and CNEHg19DanRer7 dataset |
CNEDensity | CNEDensity function |
CNEDensity-method | CNEDensity function |
CNEDensity-methods | CNEDensity function |
CNEHg19DanRer7 | CNEHg19DanRer7 and CNEHg19DanRer7 dataset |
cneHg19DanRer7_45_50 | These datasets of CNE density values. |
cneHg19DanRer7_48_50 | These datasets of CNE density values. |
cneHg19DanRer7_49_50 | These datasets of CNE density values. |
cneMerge | CNE merge function |
CNEMerged | Class '"CNE"' |
CNEMerged-method | Class '"CNE"' |
CNERepeatsFiltered | Class '"CNE"' |
CNERepeatsFiltered-method | Class '"CNE"' |
cpgIslands | Example data for plotting annotation. |
fetchChromSizes | fetchChromSizes function. |
finalCNE | finalCNE dataset |
ideoTrack | Example data for plotting annotation. |
length-method | Class '"Axt"' |
nchar-method | Class '"Axt"' |
qSizesDanRer7 | The chromosome sizes data. |
qSizesHg19 | The chromosome sizes data. |
queryRanges | Class '"Axt"' |
queryRanges-method | Class '"Axt"' |
querySeqs | Class '"Axt"' |
querySeqs-method | Class '"Axt"' |
readAxt | readAxt function. |
readBed | readBed function |
readCNERangesFromSQLite | readCNERangesFromSQLite function |
refGenes | Example data for plotting annotation. |
reverseCigar | reverseCigar function |
saveCNEToSQLite | saveCNEToSQLite function |
saveCNEToSQLite-method | saveCNEToSQLite function |
saveCNEToSQLite-methods | saveCNEToSQLite function |
score-method | Class '"Axt"' |
subAxt | 'subAxt' method |
subAxt-method | 'subAxt' method |
subAxt-methods | 'subAxt' method |
symCount | Class '"Axt"' |
symCount-method | Class '"Axt"' |
targetRanges | Class '"Axt"' |
targetRanges-method | Class '"Axt"' |
targetSeqs | Class '"Axt"' |
targetSeqs-method | Class '"Axt"' |
thresholds | Class '"CNE"' |
thresholds-method | Class '"CNE"' |
writeAxt | 'writeAxt' function |
[-method | Class '"Axt"' |