AllelicImbalance-package | A package meant to provide all basic functions for high-throughput allele specific expression analysis |
alleleCounts | ASEset objects |
alleleCounts-method | ASEset objects |
AllelicImbalance | A package meant to provide all basic functions for high-throughput allele specific expression analysis |
ASEset | ASEset objects |
ASEset-barplot | barplot ASEset objects |
ASEset-class | ASEset objects |
ASEset-locationplot | locationplot ASEset objects |
ASEsetFromCountList | Initialize ASEset |
barplot | barplot ASEset objects |
barplot-method | barplot ASEset objects |
binom.test-method | binomial test |
chisq.test-method | chi-square test |
fraction | ASEset objects |
fraction-method | ASEset objects |
getAlleleCounts | snp count data |
getAlleleCounts2 | snp count data |
getAnnotationDataFrame | AnnotationDb wrappers |
getAreaFromGeneNames | Get Gene Area |
getCDSFromAnnotation | AnnotationDb wrappers |
getCDSVector | AnnotationDb wrappers |
getDefaultMapBiasExpMean | Map Bias |
getDefaultMapBiasExpMean3D | Map Bias |
getExonsFromAnnotation | AnnotationDb wrappers |
getExonsVector | AnnotationDb wrappers |
getGenesFromAnnotation | AnnotationDb wrappers |
getGenesVector | AnnotationDb wrappers |
getSnpIdFromLocation | Get rsIDs from locations of SNP |
getTranscriptsFromAnnotation | AnnotationDb wrappers |
getTranscriptsVector | AnnotationDb wrappers |
GRvariants | GRvariants object |
impBamGAL | Import Bam |
impBamGRL | Import Bam |
impBcfGR | Import Bcf Selection |
impBcfGRL | Import Bcf Selection |
initialize-ASEset | Initialize ASEset |
locationplot | locationplot ASEset objects |
locationplot-method | locationplot ASEset objects |
mapBias | ASEset objects |
mapBias-method | ASEset objects |
reads | reads object |
scanForHeterozygotes | scanForHeterozygotes |