source("http://bioconductor.org/biocLite.R")
biocLite("gageData")

gageData

Auxillary data for gage package

Bioconductor version: 2.13

This is a supportive data package for the software package, gage. However, the data supplied here are also useful for gene set or pathway analysis or microarray data analysis in general. In this package, we provide two demo microarray dataset: GSE16873 (a breast cancer dataset from GEO) and BMP6 (originally published as an demo dataset for GAGE, also registered as GSE13604 in GEO). This package also includes commonly used gene set data based on KEGG pathways and GO terms for major research species, including human, mouse, rat and budding yeast. Mapping data between common gene IDs for budding yeast are also included.

Author: Weijun Luo

Maintainer: Weijun Luo <luo_weijun at yahoo.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("gageData")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gageData")

 

PDF		Reference Manual
Text		NEWS

Details

biocViews	Cancer, ExperimentData
Version	2.0.3
License	GPL (>=2.0)
Depends	R (>= 2.10)
Imports
Suggests	gage, pathview, genefilter
System Requirements
URL
Depends On Me
Imports Me
Suggests Me	gage

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	gageData_2.0.3.tar.gz
Windows Binary	gageData_2.0.3.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	gageData_2.0.3.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats