source("http://bioconductor.org/biocLite.R")
biocLite("RNAseqData.HNRNPC.bam.chr14")

RNAseqData.HNRNPC.bam.chr14

Aligned reads from RNAseq experiment: Transcription profiling by high throughput sequencing of HNRNPC knockdown and control HeLa cells

Bioconductor version: 2.13

The package contains 8 BAM files, 1 per sequencing run. Each BAM file was obtained by (1) aligning the reads (paired-end) to the full hg19 genome with TopHat2, and then (2) subsetting to keep only alignments on chr14. See accession number E-MTAB-1147 in the ArrayExpress database for details about the experiment, including links to the published study (by Zarnack et al., 2012) and to the FASTQ files.

Author: H. Pages

Maintainer: H. Pages <hpages at fhcrc.org>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RNAseqData.HNRNPC.bam.chr14")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RNAseqData.HNRNPC.bam.chr14")

 

PDF		Reference Manual

Details

biocViews	ExperimentData, Homo_sapiens, RNAseqData
Version	0.1.4
License	LGPL
Depends
Imports
Suggests	Rsamtools, BiocInstaller
System Requirements
URL	http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-1147/
Depends On Me	RNAseqData.HeLa.bam.chr14
Imports Me	RNAseqData.HeLa.bam.chr14
Suggests Me	Rsamtools, SplicingGraphs

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	RNAseqData.HNRNPC.bam.chr14_0.1.4.tar.gz
Windows Binary	RNAseqData.HNRNPC.bam.chr14_0.1.4.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	RNAseqData.HNRNPC.bam.chr14_0.1.4.tgz
Browse/checkout source	(username/password: readonly)
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