source("http://bioconductor.org/biocLite.R")
biocLite("Mulder2012")

Mulder2012

Predicting functional networks and modules of chromatin factors controlling adult stem cell fate from RNA interference screens

Bioconductor version: 2.13

This package provides functions to reproduce results and figures in Mulder K. et. al. published in Nature Cell Biology 2012 and Wang X. et. al. published in PLoS Computational Biology 2012.

Author: Xin Wang <Xin.Wang at cancer.org.uk>, Florian Markowetz <Florian.Markowetz at cancer.org.uk>

Maintainer: Xin Wang <Xin.Wang at cancer.org.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Mulder2012")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Mulder2012")

 

PDF	R Script	Main vignette:Posterior association network and enriched functional gene modules inferred from rich phenotypes of gene perturbations
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, ExperimentData
Version	0.2.5
License	Artistic-2.0
Depends	R (>= 2.14), org.Hs.eg.db, KEGG.db
Imports	igraph, HTSanalyzeR, PANR, RedeR, pvclust, MASS
Suggests	snow
System Requirements
URL
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	Mulder2012_0.2.5.tar.gz
Windows Binary	Mulder2012_0.2.5.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	Mulder2012_0.2.5.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats