source("http://bioconductor.org/biocLite.R")
biocLite("MMDiffBamSubset")

MMDiffBamSubset

Example ChIP-Seq data for the MMDiff package

Bioconductor version: 2.13

Subset of BAM files, including WT_2.bam, Null_2.bam, Resc_2.bam, Input.bam from the "Cfp1" experiment (see Clouaire et al., Genes Dev. 2012). Data is available under ArrayExpress accession numbers E-ERAD-79. Additionally, corresponding subset of peaks called by MACS

Author: Gabriele Schweikert

Maintainer: Gabriele Schweikert <G.Schweikert at ed.ac.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("MMDiffBamSubset")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MMDiffBamSubset")

 

PDF		Reference Manual

Details

biocViews	ChIPseqData, ExperimentData
Version	0.99.4
License	LGPL
Depends
Imports
Suggests	MMDiff
System Requirements
URL
Depends On Me
Imports Me
Suggests Me	MMDiff

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	MMDiffBamSubset_0.99.4.tar.gz
Windows Binary	MMDiffBamSubset_0.99.4.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	MMDiffBamSubset_0.99.4.tgz
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