Various data sets for use with the puma package


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Documentation for package ‘pumadata’ version 1.99.7

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affybatch.estrogen The data from the estrogen package as an AffyBatch object
eset_estrogen_comb The data from the estrogen package processed using the multi-mgMOS and PUMAcomb algorithms
eset_estrogen_mmgmos The data from the estrogen package processed using the multi-mgMOS algorithm
eset_estrogen_pmmmgmos The data from the estrogen package processed using the multi-mgMOS use PM intensities only
eset_estrogen_rma The data from the estrogen package processed using the RMA algorithm
Human_Location The coordinates of probes and the mapped PM for human exon chips
Human_probes_transcripts The number of probes and the number of transcripts mapped to each gene for human exon chips
Human_transcript_name The names of transcripts mapped to each gene for human exon chips
Human_transcript_NO The coordinates of probes and the mapped transcripts for human exon chips
Mouse_Location The coordinates of probes and the mapped PM for Mouse exon chips
Mouse_probes_transcripts The number of probes and the number of transcripts mapped to each gene for mouse exon chips
Mouse_transcript_name The names of transcripts mapped to each gene for mouse exon chips
Mouse_transcript_NO The coordinates of probes and the mapped transcripts mapped for mouse exon chips
pumapca_estrogen The data from the estrogen package processed using the pumaPCA algorithm
Rat_Location The coordinates of probes and the mapped PM for Rat exon chips
Rat_probes_transcripts The number of probes and the number of transcripts mapped to each gene for rat exon chips
Rat_transcript_name The names of transcripts mapped to each gene for rat exon chips
Rat_transcript_NO The coordinates of probes and the mapped transcripts for rat exon chips