source("http://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP.20090506")

SNPlocs.Hsapiens.dbSNP.20090506

SNP locations for Homo sapiens (dbSNP Build 130)

Bioconductor version: 2.13

SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 130. The source data files used for this package were created by NCBI on 5-6 May, 2009, and contain SNPs mapped to reference genome NCBI Build 36.1, which is identical to the hg18 genome from UCSC. Therefore, the SNPs in this package can be "injected" in BSgenome.Hsapiens.UCSC.hg18 and they will land at the correct location.

Author: Herve Pages

Maintainer: H. Pages <hpages at fhcrc.org>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("SNPlocs.Hsapiens.dbSNP.20090506")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SNPlocs.Hsapiens.dbSNP.20090506")

 

PDF		Reference Manual

Details

biocViews	AnnotationData, Genetics, Homo_sapiens
Version	0.99.8
License	Artistic-2.0
Depends	R (>= 2.10), IRanges, GenomicRanges, BSgenome(>= 1.25.6)
Imports	methods, utils, IRanges, GenomicRanges, BSgenome
Suggests	Biostrings, BSgenome.Hsapiens.UCSC.hg18(>= 1.3.19)
System Requirements
URL
Depends On Me
Imports Me
Suggests Me	ind1KG

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	SNPlocs.Hsapiens.dbSNP.20090506_0.99.8.tar.gz
Windows Binary	SNPlocs.Hsapiens.dbSNP.20090506_0.99.8.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	SNPlocs.Hsapiens.dbSNP.20090506_0.99.8.tgz
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