IlluminaHumanMethylation450k | Bioconductor annotation data package |
IlluminaHumanMethylation450k.db | Bioconductor annotation data package |
IlluminaHumanMethylation450kACCNUM | Map Manufacturer identifiers to Accession Numbers |
IlluminaHumanMethylation450kALIAS2PROBE | Map between Common Gene Symbol Identifiers and Manufacturer Identifiers |
IlluminaHumanMethylation450kBLAME | Who checked the latest build of these annotations into version control? |
IlluminaHumanMethylation450kBUILD | Divulge the GoldenPath genome build ID for these annotations. |
IlluminaHumanMethylation450kCHR | Map Manufacturer IDs to Chromosomes |
IlluminaHumanMethylation450kCHR36 | Chromosome annotations against genome build 36 |
IlluminaHumanMethylation450kCHR37 | Chromosome annotations against genome build 37 |
IlluminaHumanMethylation450kCHRLENGTHS | A named vector for the length of each of the chromosomes |
IlluminaHumanMethylation450kCHRLOC | Map Manufacturer IDs to Chromosomal Location |
IlluminaHumanMethylation450kCHRLOCEND | Map Manufacturer IDs to Chromosomal Location |
IlluminaHumanMethylation450kCOLORCHANNEL | Color Channel for locus assay |
IlluminaHumanMethylation450kCPG36 | CpG location annotations against genome build 36 |
IlluminaHumanMethylation450kCPG37 | CpG location annotations against genome build 37 |
IlluminaHumanMethylation450kCPGCOORDINATE | Map Manufacturer IDs to genomic coordinate |
IlluminaHumanMethylation450kCPGILOCATION | Map Illumina probeIDs to the the nearest UCSC CpG island, if any |
IlluminaHumanMethylation450kCPGINAME | Map Illumina probeIDs to the the nearest UCSC CpG island, if any |
IlluminaHumanMethylation450kCPGIRELATION | Map Illumina probeIDs to the the nearest UCSC CpG island, if any |
IlluminaHumanMethylation450kCPGS | Number of CpG dinucleotides in target genomic sequence |
IlluminaHumanMethylation450kDESIGN | Probe design type for HumanMethylation450k arrays |
IlluminaHumanMethylation450kDHS | Is the probe targeted at a DNAse hypersensitive site in the genome? |
IlluminaHumanMethylation450kDMR | Is the probe targeted at a differentially methylated region? What sort? |
IlluminaHumanMethylation450kENHANCER | Is the probe associated with an enhancer binding site? |
IlluminaHumanMethylation450kENSEMBL | Map Ensembl gene accession numbers with Entrez Gene identifiers |
IlluminaHumanMethylation450kENSEMBL2PROBE | Map Ensembl gene accession numbers with Entrez Gene identifiers |
IlluminaHumanMethylation450kENTREZID | Map between Manufacturer Identifiers and Entrez Gene |
IlluminaHumanMethylation450kENZYME | Map between Manufacturer IDs and Enzyme Commission (EC) Numbers |
IlluminaHumanMethylation450kENZYME2PROBE | Map between Enzyme Commission Numbers and Manufacturer Identifiers |
IlluminaHumanMethylation450kFANTOM | Is the probe associated with an enhancer binding site? |
IlluminaHumanMethylation450kGENEBODY | Determine whether a probe maps into a gene body |
IlluminaHumanMethylation450kGENENAME | Map between Manufacturer IDs and Genes |
IlluminaHumanMethylation450kGO | Map between Manufacturer IDs and Gene Ontology (GO) |
IlluminaHumanMethylation450kGO2ALLPROBES | Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree |
IlluminaHumanMethylation450kGO2PROBE | Map between Gene Ontology (GO) and Manufacturer Identifiers |
IlluminaHumanMethylation450kISCPGISLAND | Determine whether a probe is within a CpG island |
IlluminaHumanMethylation450kLOCUSID | Map between Manufacturer Identifiers and Entrez Gene |
IlluminaHumanMethylation450kMAP | Map between Manufacturer Identifiers and cytogenetic maps/bands |
IlluminaHumanMethylation450kMAPCOUNTS | Number of mapped keys for the maps in package IlluminaHumanMethylation450k.db |
IlluminaHumanMethylation450kMETHYL27 | Determine whether a probe is also found on the 27k chip |
IlluminaHumanMethylation450kNUID | Map Illumina probe IDs to the NuID representation of the target sequence |
IlluminaHumanMethylation450kOMIM | Map between Manufacturer Identifiers and Mendelian Inheritance in Man (MIM) identifiers |
IlluminaHumanMethylation450kORGANISM | The Organism information for IlluminaHumanMethylation450k |
IlluminaHumanMethylation450kORGPKG | The Organism information for IlluminaHumanMethylation450k |
IlluminaHumanMethylation450kPATH | Mappings between probe identifiers and KEGG pathway identifiers |
IlluminaHumanMethylation450kPATH2PROBE | Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers |
IlluminaHumanMethylation450kPFAM | Map Manufacturer IDs to Pfam IDs |
IlluminaHumanMethylation450kPMID | Map between Manufacturer Identifiers and PubMed Identifiers |
IlluminaHumanMethylation450kPMID2PROBE | Map between PubMed Identifiers and Manufacturer Identifiers |
IlluminaHumanMethylation450kPROBELOCATION | Map Illumina probe IDs to the location of the target sequence |
IlluminaHumanMethylation450kPROSITE | Map Manufacturer IDs to PROSITE ID |
IlluminaHumanMethylation450kRANDOM | Determine whether a probe was randomly selected in the design phase. |
IlluminaHumanMethylation450kREFSEQ | Map between Manufacturer Identifiers and RefSeq Identifiers |
IlluminaHumanMethylation450kREGULATORYGROUP | Map Illumina probeIDs to the the nearest UCSC regulatory feature, if any |
IlluminaHumanMethylation450kREGULATORYLOCATION | Map Illumina probeIDs to the the nearest UCSC regulatory feature, if any |
IlluminaHumanMethylation450kREGULATORYNAME | Map Illumina probeIDs to the the nearest UCSC regulatory feature, if any |
IlluminaHumanMethylation450kSVNID | What is the in-house Subversion ID of this annotation package? |
IlluminaHumanMethylation450kSYMBOL | Map between Manufacturer Identifiers and Gene Symbols |
IlluminaHumanMethylation450kUNIGENE | Map between Manufacturer Identifiers and UniGene cluster identifiers |
IlluminaHumanMethylation450kUNIPROT | Map Uniprot accession numbers with Entrez Gene identifiers |
IlluminaHumanMethylation450kUNIPROT2PROBE | Map Uniprot accession numbers with Entrez Gene identifiers |
IlluminaHumanMethylation450k_dbconn | Collect information about the package annotation DB |
IlluminaHumanMethylation450k_dbfile | Collect information about the package annotation DB |
IlluminaHumanMethylation450k_dbInfo | Collect information about the package annotation DB |
IlluminaHumanMethylation450k_dbschema | Collect information about the package annotation DB |
IlluminaHumanMethylation450k_get27k | Retrieve 27k probe IDs by design and/or color channel for processing |
IlluminaHumanMethylation450k_getControls | Retrieve control probe addresses, optionally by control probe type |
IlluminaHumanMethylation450k_getProbeOrdering | Retrieve probe IDs in the order loaded from the manifest |
IlluminaHumanMethylation450k_getProbes | Retrieve probe addresses by design and/or color channel for processing |