source("http://bioconductor.org/biocLite.R")
biocLite("tweeDEseq")

tweeDEseq

RNA-seq data analysis using the Poisson-Tweedie family of distributions

Bioconductor version: 2.13

Differential expression analysis of RNA-seq using the Poisson-Tweedie family of distributions.

Author: Juan R Gonzalez <jrgonzalez at creal.cat> and Mikel Esnaola <mesnaola at creal.cat> (with contributions from Robert Castelo <robert.castelo at upf.edu>)

Maintainer: Juan R Gonzalez <jrgonzalez at creal.cat>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("tweeDEseq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tweeDEseq")

 

PDF	R Script	tweeDEseq: analysis of RNA-seq data using the Poisson-Tweedie family of distributions
PDF		Reference Manual

Details

biocViews	DifferentialExpression, HighThroughputSequencing, RNAseq, Software, Statistics
Version	1.8.0
In Bioconductor since	BioC 2.9 (R-2.14)
License	GPL (>= 2)
Depends	R (>= 2.12.0)
Imports	MASS, limma, edgeR, parallel, cqn
Suggests	tweeDEseqCountData, xtable
System Requirements
URL	http://www.creal.cat/jrgonzalez/software.htm
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	tweeDEseq_1.8.0.tar.gz
Windows Binary	tweeDEseq_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	tweeDEseq_1.8.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats