source("http://bioconductor.org/biocLite.R")
biocLite("spade")

spade

SPADE -- An analysis and visualization tool for Flow Cytometry

Bioconductor version: 2.13

SPADE, or Spanning tree Progression of Density normalized Events, is an analysis and visualization tool for high dimensional flow cytometry data that organizes cells into hierarchies of related phenotypes.

Author: M. Linderman, P. Qiu, E. Simonds, Z. Bjornson

Maintainer: Michael Linderman <michael.d.linderman at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("spade")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("spade")

 

PDF	R Script	spade package
PDF		Reference Manual
Text		LICENSE

Details

biocViews	Clustering, FlowCytometry, GUI, GraphsAndNetworks, Software, Visualization
Version	1.10.2
In Bioconductor since	BioC 2.10 (R-2.15)
License	GPL-2
Depends	R (>= 2.11), igraph, Rclusterpp
Imports	Biobase, flowCore, igraph, Rclusterpp
Suggests	flowViz
System Requirements
URL	http://cytospade.org
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	spade_1.10.2.tar.gz
Windows Binary	spade_1.10.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	spade_1.10.2.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats