source("http://bioconductor.org/biocLite.R")
biocLite("sigPathway")

sigPathway

Pathway Analysis

Bioconductor version: 2.13

Conducts pathway analysis by calculating the NT_k and NE_k statistics as described in Tian et al. (2005)

Author: Weil Lai (optimized R and C code), Lu Tian and Peter Park (algorithm development and initial R code)

Maintainer: Weil Lai <wlai at alum.mit.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("sigPathway")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("sigPathway")

 

PDF	R Script	sigPathway
PDF		Reference Manual

Details

biocViews	Bioinformatics, DifferentialExpression, MultipleComparisons, Software
Version	1.30.0
In Bioconductor since	BioC 1.9 (R-2.4)
License	GPL-2
Depends	R (>= 2.10)
Imports
Suggests	hgu133a.db(>= 1.10.0), XML (>= 1.6-3), AnnotationDbi(>= 1.3.12)
System Requirements
URL	http://www.pnas.org/cgi/doi/10.1073/pnas.0506577102 http://www.chip.org/~ppark/Supplements/PNAS05.html
Depends On Me	tRanslatome
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	sigPathway_1.30.0.tar.gz
Windows Binary	sigPathway_1.30.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	sigPathway_1.30.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats