source("http://bioconductor.org/biocLite.R")
biocLite("seqCNA")

seqCNA

Copy number analysis of high-throughput sequencing cancer data

Bioconductor version: 2.13

Copy number analysis of high-throughput sequencing cancer data with fast summarization, extensive filtering and improved normalization

Author: David Mosen-Ansorena

Maintainer: David Mosen-Ansorena <dmosen.gn at cicbiogune.es>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("seqCNA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqCNA")

 

PDF	R Script	seqCNA
PDF		Reference Manual

Details

biocViews	Bioinformatics, CopyNumberVariants, Genetics, HighThroughputSequencing, Software
Version	1.2.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL-3
Depends	R (>= 2.10), GLAD(>= 2.14), doSNOW (>= 1.0.5), adehabitatLT (>= 0.3.4), seqCNA.annot(>= 0.99), methods
Imports
Suggests
System Requirements	samtools
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	seqCNA_1.2.0.tar.gz
Windows Binary	seqCNA_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	seqCNA_1.2.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats