source("http://bioconductor.org/biocLite.R")
biocLite("safe")

safe

Significance Analysis of Function and Expression

Bioconductor version: 2.13

SAFE is a resampling-based method for testing functional categories in gene expression experiments. SAFE can be applied to 2-sample and multi-class comparisons, or simple linear regressions. Other experimental designs can also be accommodated through user-defined functions.

Author: William T. Barry

Maintainer: William T. Barry <bbarry at jimmy.harvard.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("safe")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("safe")

 

PDF	R Script	SAFE manual
PDF		Reference Manual

Details

biocViews	FunctionalAnnotation, GeneExpression, Software
Version	3.2.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier
License	GPL (>= 2)
Depends	R (>= 2.4.0), AnnotationDbi, Biobase, methods, SparseM
Imports
Suggests	GO.db, KEGG.db, PFAM.db, reactome.db, hgu133a.db, breastCancerUPP, survival, foreach, doRNG, Rgraphviz, GOstats
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	safe_3.2.0.tar.gz
Windows Binary	safe_3.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	safe_3.2.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats