source("http://bioconductor.org/biocLite.R")
biocLite("quantsmooth")

quantsmooth

Quantile smoothing and genomic visualization of array data

Bioconductor version: 2.13

Implements quantile smoothing as introduced in: Quantile smoothing of array CGH data; Eilers PH, de Menezes RX; Bioinformatics. 2005 Apr 1;21(7):1146-53.

Author: Jan Oosting, Paul Eilers, Renee Menezes

Maintainer: Jan Oosting <j.oosting at lumc.nl>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("quantsmooth")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("quantsmooth")

 

PDF	R Script	quantsmooth
PDF		Reference Manual

Details

biocViews	CopyNumberVariants, Software, Visualization
Version	1.28.0
In Bioconductor since	BioC 1.9 (R-2.4)
License	GPL-2
Depends	R (>= 2.10.0), quantreg, grid
Imports
Suggests
System Requirements
URL
Depends On Me	beadarraySNP
Imports Me	GWASTools, SIM
Suggests Me	PREDA

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	quantsmooth_1.28.0.tar.gz
Windows Binary	quantsmooth_1.28.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	quantsmooth_1.28.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats