source("http://bioconductor.org/biocLite.R")
biocLite("procoil")

procoil

Prediction of Oligomerization of Coiled Coil Proteins

Bioconductor version: 2.13

The procoil package allows to predict whether a coiled coil sequence (amino acid sequence plus heptad register) is more likely to form a dimer or more likely to form a trimer. The predict function not only computes the prediction itself, but also a profile which allows to determine the strengths to which the individual residues are indicative for either class. Profiles can also be plotted and exported to files.

Author: Ulrich Bodenhofer

Maintainer: Ulrich Bodenhofer <bodenhofer at bioinf.jku.at>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("procoil")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("procoil")

 

PDF	R Script	PrOCoil - A Web Service and an R Package for Predicting the Oligomerization of Coiled-Coil Proteins
PDF		Reference Manual
Text		NEWS

Details

biocViews	Classification, Proteomics, Software
Version	1.12.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	GPL (>= 2)
Depends	R (>= 2.10.1), methods
Imports	methods, stats, graphics, utils
Suggests	Biostrings
System Requirements
URL	http://www.bioinf.jku.at/software/procoil/
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	procoil_1.12.0.tar.gz
Windows Binary	procoil_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	procoil_1.12.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats