source("http://bioconductor.org/biocLite.R")
biocLite("pcot2")

pcot2

Principal Coordinates and Hotelling's T-Square method

Bioconductor version: 2.13

PCOT2 is a permutation-based method for investigating changes in the activity of multi-gene networks. It utilizes inter-gene correlation information to detect significant alterations in gene network activities. Currently it can be applied to two-sample comparisons.

Author: Sarah Song, Mik Black

Maintainer: Sarah Song <qson003 at stat.auckland.ac.nz>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("pcot2")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pcot2")

 

PDF		HowToUseGeneLocator.pdf
PDF	R Script	PCOT2 Vignette
PDF		Reference Manual

Details

biocViews	DifferentialExpression, Microarray, Software
Version	1.30.0
In Bioconductor since	BioC 1.9 (R-2.4)
License	GPL (>= 2)
Depends	R (>= 2.0.0), grDevices, Biobase, amap
Imports
Suggests	multtest, hu6800.db, KEGG.db, mvtnorm
System Requirements
URL
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	pcot2_1.30.0.tar.gz
Windows Binary	pcot2_1.30.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	pcot2_1.30.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats