source("http://bioconductor.org/biocLite.R")
biocLite("neaGUI")

neaGUI

An R package to perform the network enrichment analysis (NEA).

Bioconductor version: 2.13

neaGUI is an easy to use R package developed to perform the network enrichment analysis (NEA) proposed by Alexeyenko et al. (2012). The NEA method extends the overlap statistics in GSEA to network links between genes in the experimental set and those in the functional categories by exploiting biological information in terms of gene interaction network. The neaGUI requires the following R packages: tcltk, KEGG.db, GO.db, reactome.db, org.Hs.eg.db, AnnotationDbi, and hwriter.

Author: Setia Pramana

Maintainer: Setia Pramana <setia.pramana at ki.se>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("neaGUI")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("neaGUI")

 

PDF	R Script	neaGUI Vignette
PDF		Reference Manual

Details

biocViews	DifferentialExpression, GUI, Microarray, Software
Version	1.0.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL-2
Depends	tcltk
Imports	hwriter
Suggests	AnnotationDbi, org.Hs.eg.db, KEGG.db, GO.db, reactome.db, RUnit, GOstats, hwriter
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	neaGUI_1.0.0.tar.gz
Windows Binary	neaGUI_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	neaGUI_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats