source("http://bioconductor.org/biocLite.R")
biocLite("mzID")

mzID

An mzIdentML parser for R

Bioconductor version: 2.13

A parser for mzIdentML files implemented using the XML package. The parser tries to be general and able to handle all types of mzIdentML files with the drawback of having less 'pretty' output than a vendor specific parser. Please contact the maintainer with any problems and supply an mzIdentML file so the problems can be fixed quick.

Author: Thomas Dybdal Pedersen, Vladislav A Petyuk with contributions from Laurent Gatto.

Maintainer: Thomas Dybdal Pedersen <thomasp85 at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("mzID")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mzID")

 

PDF	R Script	Using mzID
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, MassSpectrometry, Proteomics, Software
Version	1.0.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL (>= 2)
Depends	methods, XML
Imports	plyr
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	mzID_1.0.0.tar.gz
Windows Binary	mzID_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	mzID_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats